species:   Rhsol
pid:       PID0518
parent:    Rhi-milR-43
paralog:   
locus:     KB317711.1:436320-436408
matures:   ['CAGAGUGGAUUUGUAUUGCU', 'CAAUAUUAUCCAUCUGCC']
srr:       SRR1994877
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram KB317711.1:436320-436408

2 out of bounds
3 alignments
3 proper strand
2 stranded perfect matches

      *************************              **************************************      
UUGUGGGUUGCAGAGUGGAUUUGUAUUGCUUUUUUUUGCAUAUUGUUGCAAUAUUAUCCAUCUGCCCUUUUUAAUUAGUCUUCCCAAAC
...((((..(((((.(((((..(((((((..................))))))).)))))))))).................))))...
----------CAGAGUGGAUUUGUAUUGCU----------------------------------------------------------- l=20 a=0 c
------------------------------------------------CAAUAUUAUCCAUCUGCC----------------------- l=18 a=0 c*
--------UGCAGAGUGGAUUUGUAUUGCUU---------------------------------------------------------- l=23 a=1 ma
-----------------------------------------------GCAAUAUUAUCCAUCUGCCCUUUUUAAUUAGUCUUC------ l=36 a=0 ma*

--------UGCAGAGUGGAUUUGUAUUGCUU---------------------------------------------------------- l=23 a=1 (ma)
--------gGCAGAGUGGAUUUGUAUUGCUU---------------------------------------------------------- l=23 a=1 
UUGUGGGUUGCAGAGUGGAU--------------------------------------------------------------------- l=20 a=1 

mb-00010
ax-1001011
ku-01
ss-110111101000
fn-011
